| General information of RDP00121 | |
|---|---|
| Gene Symbol: | HS3ST4 |
| RefSeq ID: | NM_006040 |
| Repeat coordinate: | chr16:25692306-25692339 (+) |
| Repeat size: | 11 |
| Repeat region: | 5' UTR |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.677; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to DisGeNET: | |||||
|---|---|---|---|---|---|
| Disease_name | RefSeq | Score | NofPmids | NofSnps | Source |
| Amphetamine Abuse | NM_006040 | 0.30 | 1 | 0 | CTD_human |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
16
25692301
.
GGGCAGCGGCGGCGGC
G
2030.49
16
25692305
rs750955821
AGCGGCGGCGGCGGCGGCGGCG
AGCGGCGGCGGCGGCGGCG,AGCGGCGGCG,AGCGGCGGCGGCG,AGCGGCG,AGCGGCGGCGGCGGCGGCGGCGGCGGCG,A
5818970.97
16
25692308
.
G
A
5688056.05
16
25692319
.
CGGCGGCGGCGGCGGCGGCGGG
C
128443.45
16
25692328
.
CGGCGGCGGCGGG
C,GGGCGGCGGCGGG
2911.01
16
25692331
.
C
CGGCGGG,CGGCGGCGGG
3490.01
16
25692337
rs867769128
CGGG
GGGG,C
2347.32
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
16
25692305
rs750814172
AGCG
A
.
16
25692305
.
AGCGGCGGCGGCG
A
.
16
25692305
rs750955821
AGCGGCGGCGGCGGCG
A
.
16
25692305
.
AGCGGCGGCGGCGGCGGCGGCG
A
.
16
25692305
.
AGCGGCGGCGGCGGCGGCGGCGGCG
A
.
16
25692325
.
C
G
.
16
25692328
.
C
G
.
16
25692337
.
C
G
.