DRED

General information of RDP00113
Gene Symbol:SELENOS
RefSeq ID:NM_018445
Repeat coordinate:chr15:101277419-101277437 (-)
Repeat size:6
Repeat region:5' UTR
Repeat unit:CGG
Repeat conservation:PhastCons_score: 0.026; Repeat Conservation from UCSC Genome Browser
Amino acid sequence:-
Gene expression and GO annotation: BioGPS
Protein expression:Human Protein Altas
Gene conservation:Gene Conservation from UCSC Genome Browser
Mapping repeat track to DisGeNET:
Disease_nameRefSeqScoreNofPmidsNofSnpsSource
Malignant neoplasm of prostateNM_0184450.3010CTD_human
Mapping repeat track to ExAC:
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
15
101277419
rs566724578
ACCGCCG
ACCG,ACCGCCGCCG,A,ACCGCCGCCGCCG,ACCGCCGCCGCCGCCG,ACCACCGCCGCCGCCG
253380.30
15
101277421
rs752914998
CGCCGCCGCCGCCGCCGCCCAGCCCT
C,TGCCGCCGCCGCCGCCGCCCAGCCCT
125704.45
15
101277422
rs764117796
G
A,GCCT,GCCGCCGCCGCCGCCGCCCAGCC
157529.02
15
101277424
.
CGCCGCCGCCGCCGCCCAGCCCT
C
3952.81
15
101277425
rs28368985
G
T,A
416253.90
15
101277426
.
C
G
2352.14
15
101277428
.
G
T
2915.34
15
101277430
.
C
A
2272.85
15
101277433
.
C
A
1745.44
15
101277434
.
G
A
2780.25
15
101277436
.
C
A
1906.24
15
101277437
rs764487480
G
A,C
6988.65
Mapping repeat track to gnomAD:
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
15
101277419
rs566724578
ACCGCCGCCG
ACCGCCGCCGCCG,ACCACCGCCGCCGCCGCCG,ACCGCCGCCGCCGCCG,ACCGCCG,ACCGCCGCCGCCGCCGCCG,A
232968.36
15
101277421
rs752914998
CGCCGCCGCCGCCGCCGCCCAGCCCT
C
6238.24
15
101277422
rs764117796
G
GCCT
8266.71
15
101277425
rs28368985
G
T
821589.75
15
101277427
.
C
CGCCGCCGCCGCCCAGCCCT
2918.96
15
101277434
.
G
A
1897.09
15
101277436
.
C
G
1899.17
Mapping repeat track to Kaviar:
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
15
101277419
.
ACCG
A
.
15
101277419
rs752506247
ACCG
ACCGCCG,ACCGCCGCCG,A
.
15
101277420
rs561891141
C
T
.
15
101277421
rs752914998
C
T
.
15
101277422
rs764117796
G
GCCGCCGCCGCCGCCGCCCAGCC
.
15
101277425
rs28368985
G
T
.
15
101277434
.
G
A
.
15
101277436
.
C
CG
.
15
101277437
rs764487480
G
A
.