| General information of RDP00084 | |
|---|---|
| Gene Symbol: | TSPAN9 |
| RefSeq ID: | NM_001168320 |
| Repeat coordinate: | chr12:3077389-3077407 (+) |
| Repeat size: | 6 |
| Repeat region: | 5' UTR |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.133; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
12
3077387
rs376243638
TGGCGGCGGC
TGGCGGC,TGGC,TGGCGGCGGCGGCGGCGGC,TGGCGGCGGCGGC,T,TGGCGGCGGCGGCGGC
10986601.77
12
3077391
.
G
A
177246.34
12
3077393
.
C
T
83903.33
12
3077397
.
G
A
6512.98
12
3077399
.
CGG
C
706.47
12
3077402
.
CG
C
667.29
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
12
3077382
.
TCCGCTGGCGGCG
TCCGCTGGCG
.
12
3077384
.
CGCTGGC
CGCT
.
12
3077385
.
GCTGGC
GCT
.
12
3077385
.
GCTGGCGG
GCTGG
.
12
3077386
.
CTGGC
CT
.
12
3077387
.
TGGC
T
.
12
3077387
rs376243638
TGGC
TC,T,TGGGC
.
12
3077388
.
GGCG
G
.
12
3077388
.
GGCGG
GG
.
12
3077388
.
GGCGGC
GGC
.
12
3077388
.
GGCGGCG
GGCG
.
12
3077388
.
GGCGGCGGC
GGCGGC
.
12
3077388
.
GGCGGCGGCGGCG
GGCGGCGGCG
.
12
3077388
.
GGCGGCGGCGGCGGCGGC
GGCGGCGGCGGCGGC
.
12
3077391
.
G
A
.