| General information of RDP00079 | |
|---|---|
| Gene Symbol: | C11orf87 |
| RefSeq ID: | NM_207645 |
| Repeat coordinate: | chr11:109422135-109422159 (+) |
| Repeat size: | 8 |
| Repeat region: | 5' UTR |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.587; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
11
109422122
.
AGCGGCGGCGAAGGCGGCGGCG
A,AGCGGCGGCG,AGCGGCGGCGAAGGCGGCGGCGGCGGCGAAGGCGGCGGCG,AGCGGCGGCGAAGGCGGCGGCGGCGAAGGCGGCGGCG
38591.06
11
109422133
rs141602426
AGGCGGCGGCGGCGGCGGC
A,AGGCGGCGGCGGCGGCGGCGGCGGC,AGGCGGCGGCGGCGGCGGCGGCGGCGGC,AGGCGGCGGCGGCGGCGGCGGC,AGGCGGCGGCGGC,AGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
9254153.88
11
109422138
.
G
A
7195667.05
11
109422139
.
C
T
7194415.58
11
109422140
.
G
GGCGGCA
7079853.47
11
109422143
.
G
A
7005114.44
11
109422145
.
C
CA
6983649.31
11
109422146
.
G
GGCGGCGGCGGCGGCA,A,GC
6948283.71
11
109422149
.
G
A
7011802.22
11
109422151
.
C
CGAA
6935784.97
11
109422155
.
G
GGCGGCGGCGGCA
237.70
11
109422158
.
G
GGCGGCA,GGCGGCGGCA,GGCGGCGGCGGCA,GGCGGCGGCC,A
6960.66
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
11
109422129
.
GCGAAGGCGGCGGCGGCGGCGGC
GCGAA
.
11
109422130
.
CGAAGGCGGCGGCGGCGGCGGC
CGAA
.
11
109422132
.
AAGGCGGCGGCGGCGGCGGC
AA
.
11
109422133
.
AGGCGGCGGCGGCGGCGGC
A
.
11
109422133
.
AGGCGGCGGCGGCGGCGGCGGCGGCGGC
AGGCGGCGGC
.
11
109422133
.
AGGC
A
.
11
109422133
.
AGGCGGC
A
.
11
109422133
.
AGGCGGCGGC
A
.
11
109422133
.
AGGCGGCGGCGGC
A
.
11
109422133
rs71053839
AGGCGGCGGCGGCGGCGGC
A,AGGCGGCGGCAGCGGCGAA,AGGCGGCGGCGGC,AGGCGGCGGCGGCGGCGGCGGCGGC,AGGCGGCGGCGGCGGCGGCGGCGGCGGC
.
11
109422134
.
GGCGGCGGCGGCGGCGGCGGCGG
GGCGG
.
11
109422134
.
GGCGGCGGCGGCGGCGGCGGCGGC
GGCGGC
.
11
109422134
.
GGCGGCGGCGGCGGCGGCGGCGGCG
GGCGGCG
.
11
109422134
.
GGCGGCGGCGGCGGCGGCGGCGGCGGCAGCA
GGCGGCGGCAGCA
.
11
109422134
.
GGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAGCGCGG
GGCGGCGGCAGCAGCGCGG
.
11
109422138
.
G
GC
.
11
109422143
.
G
A
.
11
109422143
.
GGCGGCGGCGGCGGCGGCAGCAGCGC
AGCAGCGC
.
11
109422146
.
G
A
.
11
109422149
.
G
A
.
11
109422150
.
G
A
.
11
109422150
.
GC
AA
.
11
109422151
.
C
A
.
11
109422157
.
C
T
.