DRED

General information of RDP00048
Gene Symbol:VAV3
RefSeq ID:NM_006113
Repeat coordinate:chr1:107964920-107964938 (-)
Repeat size:6
Repeat region:5' UTR
Repeat unit:CGG
Repeat conservation:PhastCons_score: 0.005; Repeat Conservation from UCSC Genome Browser
Amino acid sequence:-
Gene expression and GO annotation: BioGPS
Protein expression:Human Protein Altas
Gene conservation:Gene Conservation from UCSC Genome Browser
Mapping repeat track to DisGeNET:
Disease_nameRefSeqScoreNofPmidsNofSnpsSource
Malignant neoplasm of prostateNM_0061130.4010CTD_human
Mapping repeat track to ExAC:
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
107964919
rs769974059
GGCCGCCGCC
GGCCGCC,GGCC,GGCCGCCGCCGCC,AGCCGCCGCC,G
8528940.85
1
107964920
.
GC
G
8421006.42
Mapping repeat track to gnomAD:
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
107964919
rs769974059
GGCCGCCGCC
GGCCGCC,GGCC,GGCCGCCGCCGCC,AGCCGCCGCC,G,GGCCGCCGCCGCCGCC
11817567.78
1
107964920
.
GC
G
11607810.64
1
107964923
.
GCC
G
815961.24
1
107964930
.
C
T
3537.62
1
107964935
.
G
A
1780.21
1
107964937
.
CGCG
C
340.55
Mapping repeat track to Kaviar:
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
107964916
.
TGCGGCC
TGCG
.
1
107964917
.
GCGGCC
GCG
.
1
107964918
.
CGGCCGCCGCCGCCGCCGCC
CGGCCGCCGCCGCCGCC
.
1
107964919
.
GGCC
G
.
1
107964919
.
GGCCGCC
G,GGCC
.
1
107964919
.
GGCCGCCGCC
AGCCGCCGCC,G,GGCC,GGCCGCC
.
1
107964919
rs750241388
GGCC
G
.
1
107964919
rs746953765
GGCCGCC
G,GGCC
.
1
107964919
rs762130895
GGCCGCCGCC
G,GGCCGCC
.
1
107964920
.
GCCG
G
.
1
107964920
.
GCCGC
GC
.
1
107964920
.
GCCGCCG
GCCG
.
1
107964920
.
GCCGCCGC
GCCGC
.
1
107964920
.
GCCGCCGCCG
GCCGCCG
.
1
107964920
.
GCCGCCGCCGC
GCCGCCGC
.
1
107964920
.
GCCGCCGCCGCC
GCCGCCGCC
.
1
107964920
.
GCCGCCGCCGCCG
GCCGCCGCCG
.
1
107964920
.
GCCGCCGCCGCCGC
GCCGCCGCCGC
.
1
107964920
.
GCCGCCGCCGCCGCCGCC
GCCGCCGCCGCCGCC
.
1
107964920
.
GCCGCCGCCGCCGCCGCCGCGGTT
GCCGCCGCCGCCGCCGCGGTT
.
1
107964929
rs528290139
G
T
.
1
107964931
.
CG
C
.
1
107964931
.
CGCCG
TA
.
1
107964937
.
CGCG
CGCA,G
.