| General information of RDP00047 | |
|---|---|
| Gene Symbol: | SSBP3 |
| RefSeq ID: | NM_001009955 |
| Repeat coordinate: | chr1:54406363-54406387 (-) |
| Repeat size: | 8 |
| Repeat region: | 5' UTR |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.192; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
54406357
.
ACCGCTGCCGCCG
ACTGCCGCCG,A
656.97
1
54406362
rs774572021
TGCCGCCGCC
TGCC,TGCCGCC,T,TGCCGCCGCCGCC,TGCCGCCGCCGCCGCC,TGCCGCCGCCGCCGCCGCC
14215550.68
1
54406365
.
C
T
13941702.15
1
54406366
.
GCC
G
591290.61
1
54406369
.
G
A
367722.90
1
54406374
.
CGCCGCCGCCGCCGCT
C
6181.23
1
54406383
.
CGCCGCT
C
4305.77
1
54406385
.
C
T
4743.41
1
54406386
.
CGCT
C
6840.65
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
54406362
.
TGCC
T
.
1
54406362
rs3033693
TGCC
T,TGCCGCCGCC
.
1
54406362
.
TGCCGCCGCC
T,TGCCGCC
.
1
54406363
.
GCCGCC
GCC
.
1
54406363
.
GCCGCCGCCG
GCCGCCG
.
1
54406363
.
GCCGCCGCCGCCGC
GCCGCCGCCGC
.
1
54406363
.
GCCGCCGCCGCCGCC
GCCGCC
.
1
54406363
.
GCCGCCGCCGCCGCCGCCGCC
GCCGCCGCCGCC
.
1
54406363
.
GCCG
GC,G
.
1
54406365
.
C
T
.
1
54406379
.
C
T
.
1
54406381
rs561057340
G
T
.
1
54406386
.
C
T
.