| General information of RDP00046 | |
|---|---|
| Gene Symbol: | SSBP3 |
| RefSeq ID: | NM_001009955 |
| Repeat coordinate: | chr1:54406038-54406059 (-) |
| Repeat size: | 7 |
| Repeat region: | 5' UTR |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.276; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to ESP: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
54406036
.
TCGCCGC
T,TCGCCGCCGCCGC,TCGC
.
| Mapping repeat track to ExAC: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
54406040
rs775285180
C
T
1515309.79
1
54406041
.
G
A,GCCGCCA
1505521.62
1
54406044
.
G
GCCGCCA
8109.56
1
54406045
.
C
CCGCCGT
7491.31
1
54406047
.
G
GCCGCCA
4100.98
1
54406048
.
C
CCGCCGCCGCCGA
3918.79
1
54406050
.
G
GCCGCCA
893.56
1
54406051
.
C
CCGCCGA
104.79
1
54406052
.
C
T,CGCCGCCGCCGCCGCT
1063.56
1
54406053
.
G
A,GCCGCCA,GCCGCCGCCGCCGCTA
2202.98
1
54406055
.
C
T
778.92
1
54406056
rs763754972
G
A,GCCGCCA,GCCGCTA
1476.93
1
54406058
rs746315398
CGCT
C
1200.83
1
54406059
.
G
GCCGCCA,GCCGCCC
1193.76
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
54406036
rs759612820
TCGCCGC
TCGCCGCCGCCGC,TCGCCGCCGCCGCCGCCGC,T,TCGC,TCGCCGCCGC,TCGCCGCCGCCGCCGCCGCCGC
7343799.33
1
54406048
.
C
CCGCCGCCGCCGA
686.37
1
54406055
.
C
CGCCGCCGCCGCT
654.42
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
54406036
rs771379106
TCGC
TCGCCGCCGC,T
.
1
54406036
rs777834565
TCGCCGC
TCGC,TCGCCGCCGC,TCGCCGCCGCCGC,TCGCCGCCGCCGCCGC,TCGCCGCCGCCGCCGCCGC,T
.
1
54406040
rs775285180
C
T
.
1
54406046
rs762547893
C
A
.
1
54406056
rs763754972
G
A
.
1
54406058
rs746315398
CGCT
C
.