General information of RDP00045
Gene Symbol:LRP8
RefSeq ID:NM_001018054
Repeat coordinate:chr1:53328016-53328037 (-)
Repeat size:7
Repeat region:5' UTR
Repeat unit:CGG
Repeat conservation:PhastCons_score: 0.002; Repeat Conservation from UCSC Genome Browser
Amino acid sequence:-
Gene expression and GO annotation: BioGPS
Protein expression:Human Protein Altas
Gene conservation:Gene Conservation from UCSC Genome Browser
Mapping repeat track to OMIM:
PhenotypeOMIM_idLocation
{Myocardial infarction, susceptibility to}, 608446 (3)6026001p32.3
Mapping repeat track to DisGeNET:
Disease_nameRefSeqScoreNofPmidsNofSnpsSource
Major Depressive DisorderNM_0010180540.3110PSYGENET
Mapping repeat track to 1000 Genomes:
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
53328016
.
CCCG
CCCGCCGCCG,C
100
Mapping repeat track to gnomAD:
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
53328016
rs528801146
CCCGCCGCCG
CCCGCCG,CCCGCCGCCGCCGCCG,CCCGCCGCCGCCG,C,CCCGCCGCCGCCGCCGCCG
893656.04
1
53328018
.
CG
C
552965.98
1
53328020
.
CCG
C
19115.22
1
53328031
.
G
A
573.36
1
53328036
.
CGCT
C
16279.67
Mapping repeat track to Kaviar:
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
53328016
rs528801146
CCCG
CCCGCCGCCG,C
.
1
53328016
.
CCCGCCGCCG
C
.
1
53328036
.
CGCT
C
.
1
53328037
.
G
C
.