| General information of RDP00038 | |
|---|---|
| Gene Symbol: | CCNL2 |
| RefSeq ID: | NM_001320153 |
| Repeat coordinate: | chr1:1399284-1399302 (-) |
| Repeat size: | 6 |
| Repeat region: | 5' UTR |
| Repeat unit: | CGG |
| Repeat conservation: | PhastCons_score: 0.471; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to ExAC: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
1399283
rs745352821
AGCCGCCGCC
AGCCGCC,AGCCGCCGCCGCCGCC,AGCCGCCGCCGCCGCCGCC,AGCCGCCGCCGCC,A,AGCC
97079.35
1
1399286
.
C
G
64302.65
1
1399287
rs757140991
G
A,T
13180.85
1
1399288
.
C
T,A
11970.54
1
1399289
.
C
T
11634.31
1
1399290
rs547237679
G
A
8834.17
1
1399293
.
G
A
388.71
1
1399297
rs780670206
C
T
54.93
1
1399299
.
G
A,C
3285.64
1
1399302
.
G
A
167.72
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
1399283
rs745352821
AGCCGCCGCC
AGCCGCCGCCGCC,AGCCGCCGCCGCCGCC,AGCCGCCGCCGCCGCCGCC,A,AGCC,AGGGGCCGCCGCC
42867.33
1
1399286
.
C
A
4227.79
1
1399287
rs757140991
G
T,A
4559.85
1
1399288
.
C
G
4133.11
1
1399295
.
C
T
442.43
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
1399283
rs756782844
AGCC
A
.
1
1399283
rs780732270
AGCCGCCGCC
A,AGCCGCC,AGCCGCCGCCGCC
.
1
1399284
.
GCCGCC
GCCTCC
.
1
1399287
rs757140991
G
T
.
1
1399289
.
CG
CCC
.
1
1399290
rs547237679
G
A
.
1
1399293
.
G
C
.
1
1399297
rs780670206
C
T
.
1
1399298
.
C
CG
.
1
1399301
.
C
CG
.
1
1399302
.
G
A
.
1
1399302
.
G
GC
.