| General information of RDP00025 | |
|---|---|
| Gene Symbol: | BCL2L11 |
| RefSeq ID: | NM_001204106 |
| Repeat coordinate: | chr2:111120980-111121019 (+) |
| Repeat size: | 13 |
| Repeat region: | 5' UTR |
| Repeat unit: | CCG |
| Repeat conservation: | PhastCons_score: 0.002; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to DisGeNET: | |||||
|---|---|---|---|---|---|
| Disease_name | RefSeq | Score | NofPmids | NofSnps | Source |
| PROSTATE CANCER, HEREDITARY, 1 | NM_001204106 | 0.30 | 1 | 0 | CTD_human |
| Mapping repeat track to 1000 Genomes: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
111120979
.
TGCCGCCGCCGCCGCCGCC
T
100
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
111120966
.
GCGCCGCTGCCGCTGCCGCCGCCGCCGCCGCCGC
GCGCCGCCGCCGCTGCCGCTGCCGCCGCCGCCGCCGCCGC,GCGCCGC,GCGCCGCCGCCGCCGCCGCCGCTGCCGCTGCCGCCGCCGCCGCCGCCGC,G
2529.29
2
111120973
.
TGCCGCTGCCGCCGCCGCCGCCGCC
CGCCGCTGCCGCCGCCGCCGCCGCC,TGCC,TGCCGCCGCCGCTGCCGCCGCCGCCGCCGCC,TGCCGCCGCCGCC,T
19746.84
2
111120981
.
C
CAG
12936130.78
2
111120982
.
C
CGCT,CGCTGCCGCT,CGCCGCCGCT
11635945.96
2
111120984
.
C
CTG
10846397.68
2
111120985
rs1439286
C
T,CCGCT
10834319.13
2
111120986
.
G
A
10594698.46
2
111120987
.
C
CTG
10600899.13
2
111120988
rs3929143
C
T,CGCCGCCGCCGCCGCT,CGCT,CCGCT
10233166.10
2
111120991
rs866556822
C
T
282259.41
2
111120993
.
C
T
20800.66
2
111120994
.
C
T
287437.74
2
111120995
.
G
T
7921.91
2
111120997
rs866149354
C
T
612885.09
2
111121000
rs868029135
C
T
24898.52
2
111121003
.
C
T
6580.94
2
111121006
.
CGCCGCCGCCGCCGCCACT
TGCCGCCGCCGCCGCCACT,C
2843.12
2
111121007
.
G
A
2842.81
2
111121008
.
C
A
2088.15
2
111121009
.
C
T
5097.63
2
111121015
.
CGCCGCCACT
C
2357.64
2
111121018
.
C
T
2930.89
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
2
111120979
rs5833391
TGCC
T,TGCCGCC,TGCCGCT
.
2
111120979
.
TGCCGCC
T,TGCC
.
2
111120979
.
TGCCGCCGCC
T,TGCCGCC
.
2
111120979
.
TGCCGCCGCCGCC
T,TGCCGCCGCC
.
2
111120979
.
TGCCGCCGCCGCCGCC
T
.
2
111120979
rs575413492
TGCCGCCGCCGCCGCCGCC
T
.
2
111120979
.
TGCCGCCGCCGCCGCCGCCGCCGCC
T
.
2
111120982
.
C
T
.
2
111120982
.
C
CGCTGCCGCT,CGCT
.
2
111120983
.
GCCGCC
GCTGCC
.
2
111120985
rs1439286
C
T
.
2
111120985
.
CGC
TGC
.
2
111120985
.
CGCC
T,TGCC
.
2
111120985
.
CGCCGCC
T,TGCCGCC
.
2
111120985
.
CGCCGCCGCC
TGCCGCCGCC
.
2
111120985
.
CGCCGCCGCCGCC
T
.
2
111120985
.
CGCCGCCGCCGCCGCCGCCGCCGCCG
TGCCGCCGCCGCCG
.
2
111120985
.
CGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC
TGCCGCCGCCGCCGCCGCCGC
.
2
111120988
rs3929143
C
T
.
2
111120991
.
C
T
.
2
111120994
.
C
T
.
2
111120997
.
C
T
.
2
111121000
.
C
T
.
2
111121006
.
C
T
.
2
111121019
.
G
A
.