| General information of RDP00017 | |
|---|---|
| Gene Symbol: | PLXNA2 |
| RefSeq ID: | NM_025179 |
| Repeat coordinate: | chr1:208244306-208244336 (-) |
| Repeat size: | 10 |
| Repeat region: | 5' UTR |
| Repeat unit: | CCG |
| Repeat conservation: | PhastCons_score: 0.554; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to DisGeNET: | |||||
|---|---|---|---|---|---|
| Disease_name | RefSeq | Score | NofPmids | NofSnps | Source |
| Mixed anxiety and depressive disorder | NM_025179 | 0.31 | 1 | 0 | PSYGENET |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
208244304
rs763536423
TGGCGGCGGCGGCGGC
TGGCGGCGGC,TGGCGGC,TGGCGGCGGCGGC,TGGCGGCGGCGGCGGCGGCGGC,T
21471482.96
1
208244310
.
CG
TG,C
21423423.31
1
208244313
.
CGGCGG
TGGCGG,C
578461.07
1
208244324
.
G
A
8095.68
1
208244332
rs375990057
G
A
30520.70
1
208244334
.
C
A
7457.33
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
1
208244303
.
GTGGCGGC
GT
.
1
208244304
.
TGGCGGC
T
.
1
208244304
.
TGGC
T
.
1
208244304
rs758997165
TGGCGGC
T,TGGC
.
1
208244304
rs763536423
TGGCGGCGGC
T,TGGC
.
1
208244305
.
GGCGGCGGCGGCGGC
GGCGGCGGC
.
1
208244305
.
GGCGGCGGCGGCGGCGGCGGC
GGCGGCGGCGGCGGC
.
1
208244310
.
C
T
.
1
208244322
.
C
G
.
1
208244328
.
C
G
.
1
208244331
.
C
A
.
1
208244332
rs375990057
G
A
.
1
208244334
.
C
A
.