| General information of RDP00007 | |
|---|---|
| Gene Symbol: | FCN1 |
| RefSeq ID: | NM_002003 |
| Repeat coordinate: | chr9:134905866-134905923 (-) |
| Repeat size: | 19 |
| Repeat region: | 3' UTR |
| Repeat unit: | GAA |
| Repeat conservation: | PhastCons_score: 0.992; Repeat Conservation from UCSC Genome Browser |
| Amino acid sequence: | - |
| Gene expression and GO annotation: | BioGPS |
| Protein expression: | Human Protein Altas |
| Gene conservation: | Gene Conservation from UCSC Genome Browser |
| Mapping repeat track to DisGeNET: | |||||
|---|---|---|---|---|---|
| Disease_name | RefSeq | Score | NofPmids | NofSnps | Source |
| Liver Cirrhosis, Experimental | NM_002003 | 0.30 | 1 | 0 | CTD_human |
| Mapping repeat track to gnomAD: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
9
134905858
rs71483248
CTCTTCCTCTTCTTCTTCTTCTTCT
TTCTTCCTCTTCTTCTTCTTCTTCT,CTCTTCTTCT,CTCTTCTTCTTCT,CTCTTCTTCTTCTTCT,C
626557.09
9
134905864
rs28621445
CTCT
CTCTTCT,CTCTTCCTCTTCT,C,CTCTTCTTCT,CTCTTCCTCTTCTTCT
750155.62
9
134905867
rs868270368
T
TTCC,TTCCTCTTCC,TTCCTCTTCCTCTTCC
335258.56
9
134905868
rs60623608
T
TC,C,G,TCTC
450254.13
9
134905869
.
CTT
C
187376.40
9
134905870
rs7467574
T
C,TCTTCC,TCTTCCTCTTCC
299794.45
9
134905871
rs59367671
T
G,C
411731.65
9
134905872
.
CTTCTTCTTCTTCT
CTCTTCTTCTTCT,CTCTTCTTCT,C,CTCTTCT,CTCT
151652.82
9
134905873
rs867739751
T
C
194246.13
9
134905874
rs57019969
T
C,G
331448.32
9
134905875
.
CT
C
115739.37
9
134905876
rs7467575
T
C,TTCTTCC,TTCC
170896.06
9
134905877
.
T
G,C
201597.05
9
134905878
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
C,CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
56879.79
9
134905879
.
T
C
62374.30
9
134905880
rs57624290
T
C,G
108745.66
9
134905881
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT,C
24740.99
9
134905882
rs200980833
T
C
40697.93
9
134905883
.
T
C,G
67603.09
9
134905884
.
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CCTTCTT,C
14274.26
9
134905885
.
T
C
16744.71
9
134905886
rs59756453
T
C,G
38413.85
9
134905887
.
CT
C
9002.08
9
134905888
.
T
C
10801.01
9
134905889
.
T
C
190510.83
9
134905890
.
CTTCTTCTTCTTCTTCTTCTTCTT
CTCTTCTTCTTCTTCTTCTTCTT,CCTTCTT,C
8304.57
9
134905891
.
T
C
8533.18
9
134905892
rs57412283
T
C
23358.75
9
134905893
.
CTTCTTCTTCTTCTT
CTCTTCTTCTTCTT,C,CCTTCTT
18453.92
9
134905894
.
T
C
19815.43
9
134905895
.
T
C,TCTC
166871.04
9
134905896
.
CTTCTTCTTCTTCTTCTT
CCTTCTTCTTCTT,CCTTCTT,CTCTTCTTCTTCTTCTT,C
34294.89
9
134905897
.
T
C
32955.51
9
134905898
.
T
C,TCTC
23796.56
9
134905899
.
CTTCTTCTT
CCTTCTT,CTCTTCTT,C
36784.99
9
134905900
.
T
C,TCC
72478.63
9
134905901
rs191750215
T
C,TCTC,TTCTC,TCTCCTTCTC
745322.85
9
134905902
rs369270713
CTTCTTCTTCTT
CTCTTCTTCTT,CCTTCTT,C
62387.11
9
134905903
.
TTCTTCTTCTTCTTCTTCTTCTCCCTCTCCC
CTCTTCTTCTTCTTCTTCTTCTCCCTCTCCC,T,TTCTCCC
83236.80
9
134905904
.
T
C,TCTC
37852.12
9
134905905
rs371490591
CTTCTTCTTCTTCTT
CCTTCTTCTTCTT,C,CTCTTCTTCTTCTT
61996.75
9
134905906
.
T
TCC,C
309440.24
9
134905907
rs758814825
TCTTCTTCTTCTTCTTCTC
TTCTCCTTCTTCTTCTTCTTCTC,TCTCCTTCTCCTTCTTCTTCTTCTTCTC,CCTTCTTCTTCTTCTTCTC,TCTCCTTCTTCTTCTTCTTCTC,T
1611852.78
9
134905908
.
CTTCTTCTTCTT
CTCTTCTTCTT,C
37018.53
9
134905909
rs780608436
TTCTTCTTCTTCTTCTCCC
CTCTTCTTCTTCTTCTCCC,TCCCTCTTCTTCTTCTTCTCCC,T
53905.02
9
134905910
rs59676054
TCTTCTTCTTCTTCTC
T,CCTTCTTCTTCTTCTC,TCTCCTTCTTCTTCTTCTC
96673.25
9
134905911
.
CTTCTTCTT
CTCTTCTT,CCTTCTT,C
47351.12
9
134905912
.
TTCTTCTTCTTCTCCC
TCCTCTTCTTCTTCTCCC,T,CTCTTCTTCTTCTCCC
190427.92
9
134905913
rs201367035
TCTTCTTCTTCTCCCTCTC
TTCTCCTTCTCCTTCTTCTTCTCCCTCTC,TCTCCTTCTCCTTCTCCTTCTTCTTCTCCCTCTC,CCTTCTTCTTCTCCCTCTC,T,TTCTCCTTCTTCTTCTCCCTCTC
2204037.51
9
134905914
.
CTTCTT
C,CTCTT
30656.82
9
134905915
rs755569183
TTCTTCTTCTCCCTCTCCC
CTCTTCTTCTCCCTCTCCC,TCCCTCTTCTTCTCCCTCTCCC,T,TTCTCCC
53875.44
9
134905916
.
TCTTCTTCTCCCTCTC
CCTTCTTCTCCCTCTC,T
94032.76
9
134905917
.
CTT
C
36171.39
9
134905918
rs61382172
TTCTTCTCCCTCTCCC
TCCCTCTTCTCCCTCTCCC,T,CTCTTCTCCCTCTCCC,TCCTCTTCTCCCTCTCCC,TTCTCCC
54411.37
9
134905919
rs57819846
TCTTCTCCCTCTCCCTCTC
CCTTCTCCCTCTCCCTCTC,TCTCCTTCTCCTTCTCCTTCTCCTTCTCCCTCTCCCTCTC,TCTCCTTCTCCCTCTCCCTCTC,T,TTCTCCTTCTCCTTCTCCTTCTCCCTCTCCCTCTC
2367812.82
9
134905922
rs548501514
TCTCCCTCTCCCTCTC
TCCTCTCCCTCTC,CCTCCCTCTCCCTCTC,T,TCTCCTCCCTCTCCCTCTC
30242.15
9
134905923
.
C
G,CTCCTTG,CTCCTTCTCCTTG
36607.98
9
134905809
.
CCTCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCTT
CTTCTCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCTT,GCTCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCTT,CCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCTT,C
542997.50
9
134905827
.
CCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTT
CTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTT,CTTCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTT,C,CCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTT
720307.99
9
134905830
.
CTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTT
CCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTT,CCTT,CTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTT,C
647562.68
9
134905852
rs28375336
CTCTTCCTCTTCCTCTTCTTCTTCTTCTTCTTCT
TTCTTCCTCTTCCTCTTCTTCTTCTTCTTCTTCT,CTCTTCTTCTTCT,C
663431.13
| Mapping repeat track to Kaviar: |
|---|
Chr
Pos
dbSNP_ID
Ref
Alt
Qual
9
134905859
.
TCTTCCTCTTCTTCT
TCTTCCTCTTCCTCT
.
9
134905867
.
T
C
.
9
134905867
.
T
TTCC
.
9
134905868
rs60623608
T
C,G
.
9
134905868
.
TCT
TCC
.
9
134905868
.
TCTTC
CCTTC
.
9
134905870
rs7467574
T
C
.
9
134905870
.
TTCT
CTCT
.
9
134905870
.
TTCTTCT
CTCTTCC,TCCTTCT
.
9
134905870
.
TTCTTCTTCT
CTCTTCCTCT
.
9
134905871
rs59367671
T
C,G
.
9
134905873
.
T
C
.
9
134905874
rs57019969
T
C,G
.
9
134905874
.
TCT
TCC
.
9
134905875
.
CTTCTTCT
CCTCTTCC
.
9
134905876
rs7467575
T
C
.
9
134905877
.
T
C,G
.
9
134905879
.
T
C
.
9
134905880
rs57624290
T
C,G
.
9
134905882
rs200980833
T
C
.
9
134905883
.
T
C,G
.
9
134905883
.
TC
T
.
9
134905886
rs59756453
T
C,G
.
9
134905886
.
TCTTCTTCTTCTT
CCTTCTCCTTCTC
.
9
134905888
.
T
C
.
9
134905889
.
T
C,G
.
9
134905892
rs57412283
T
C,G
.
9
134905894
.
T
C
.
9
134905894
.
TTCTTCTTCT
TCCTTCTCCT
.
9
134905895
.
T
C,G
.
9
134905897
.
TTCTTC
TTCTCC
.
9
134905898
.
T
C,G
.
9
134905901
rs191750215
T
C,G
.
9
134905901
.
T
TCTC
.
9
134905902
rs369270713
CT
C
.
9
134905904
.
T
C,G
.
9
134905905
rs371490591
CTT
C,CTC
.
9
134905907
rs758814825
T
C,G
.
9
134905907
.
TCTTCTT
TCTTCTC
.
9
134905907
.
T
TCTC
.
9
134905908
rs780608436
CT
CC,C
.
9
134905910
rs59676054
T
C
.
9
134905913
rs201367035
T
C
.
9
134905913
.
TCT
CCT
.
9
134905913
.
TCTTCTT
CCTTCTC
.
9
134905913
.
TCTTCTTCTTCTCCC
CCTTCTCCTTCTCCT,TCTTCTTCTCTCTCCC
.
9
134905913
.
T
TCTC
.
9
134905915
rs755569183
T
C
.
9
134905918
rs61382172
T
C
.
9
134905919
rs57819846
T
C
.
9
134905919
.
TCT
CCC,CCT,TCTCCC
.
9
134905919
.
TCTTCTCCC
CCTTCTCCT
.
9
134905919
.
T
TCTC
.
9
134905921
rs57510222
T
C
.
9
134905921
.
TTCTCCCTCTC
TTCTCCTTCTC
.
9
134905921
rs59989375
T
TCCC
.
9
134905922
rs548501514
T
C
.
9
134905922
.
TCTCCC
TCTCCT
.
9
134905810
.
CTCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCT
C
.
9
134905854
.
CTTCCTCTTCCTCTTCTTCTTCT
CTTCCTCTTCCTCTTCC
.